Altabet, M. A., C. Pilskaln, R. Thunell, C. Pride, D. Sigman, F. Chavez and R. Francois (1999). "The nitrogen isotope biogeochemistry of sinking particles from the margin of the Eastern North Pacific." Deep-Sea Research Part I-Oceanographic Research Papers 46(4): 655-679.

Anbar, A. D., Y. L. Yung and F. P. Chavez (1996). "Methyl bromide: Ocean sources, ocean sinks, and climate sensitivity." Global Biogeochemical Cycles 10(1): 175-190.

Angel, M. V., M. A. Baars, R. T. Barber, F. P. Chavez, M. Kastner, M. Leinen, J. R. E. Lutjeharms, G. Reverdin and G. B. Shimmield (1995). Group report: How do open ocean upwelling systems operate as integrated physical, chemical, and biological systems and influence the geological record? Upwelling in the ocean: Modern processes and ancient records. C. P. Summerhayes, K.-C. Emeis, M. V. Angel, R. L. Smith and B. Zeitzschel. Chichester, John Wiley & Sons: 193-220.

Aylward, F. O., J. M. Eppley, J. M. Smith, F. P. Chavez, C. A. Scholin and E. F. DeLong (2015). Microbial community transcriptional networks are conserved in three domains at ocean basin scales. Proceedings of the National Academy of Sciences.

Bac, M. G., K. R. Buck, F. P. Chavez and S. C. Brassell (2003). "Seasonal variation in alkenones, bulk suspended POM, plankton and temperature in Monterey Bay, California: implications for carbon cycling and climate assessment." Organic Geochemistry 34(6): 837-855.

Barber, R., R. Smith, R. Dugdale, F. Chai, Y. Chao, F. Chavez, J. O'Brien and C. Mooers (2006). Coastal Upwelling Research Is Poised to Improve the Management and Conservation of Fish Resources Dramatically. Ocean Science Conference, Honolulu, Hawaii.

Barber, R. T., F P Chavez (1998). The Signature of El Niño and La Niña in Physical Conditions and Anchovy Catch in the Coastal Upwelling. EOS Transactions, American Geophysical Union, 1998 Fall Meeting.

Barber, R. T. and F. P. Chavez (1983). "Biological consequences of El Niño." Science(22): 1203-1210.

Barber, R. T. and F. P. Chavez (1986). "Ocean variability in relation to living resources during the 1982-83 El Niño." Nature 319(6051): 279-285.

Barber, R. T. and F. P. Chavez (1991). "Regulation of primary productivity rate in the equatorial Pacific Ocean." Limnology and Oceanography 36(8): 1803-1815.

Barber, R. T., J. E. Kogelschatz and F. P. Chavez (1985). "Origin of the biological anomalies during the 1982/83 El Niño." California Cooperative Fisheries Investigation Reports 26: 65-71.

Barber, R. T., M. P. Sanderson, S. T. Lindley, F. Chai, J. Newton, C. C. Trees, D. G. Foley and F. P. Chavez (1996). "Primary productivity and its regulation in the equatorial Pacific during and following the 1991-1992 El Niño." Deep-Sea Research II 43(4-6): 933-969.

Bates, T. S., R. P. Kiene, G. V. Wolfe, P. A. Matrai, F. P. Chavez, K. R. Buck, B. W. Blomquist and R. L. Cuhel (1994). "The cycling of sulfur in surface seawater of the northeast Pacific." Journal of Geophysical Research 99(C4): 7835-7843.

Behrenfeld, M. J., K. Worthington, R. M. Sherrell, F. P. Chavez, P. Strutton, M. McPhaden and D. M. Shea (2006). "Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics." Nature 442(7106): 1025-1028.

Béjà, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich and E. F. DeLong (2000). "Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea." Science 289(5486): 1902-1906.

Béjà, O., E. N. Spudich, J. L. Spudich, M. Leclerc and E. F. DeLong (2001). "Proteorhodopsin phototrophy in the ocean." Nature 411(6839): 786-789.

Béjà, O., M. T. Suzuki, E. V. Koonin, L. Aravind, A. Hadd, L. P. Nguyen, R. Villacorta, M. Amjadi, C. Garrigues, S. B. Jovanovich, R. A. Feldman and E. F. DeLong (2000). "Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage." Environmental Microbiology 2(5): 516-529.

Benson, S. R., D. A. Croll, B. B. Marinovic, F. P. Chavez and J. T. Harvey (2002). "Changes in the cetacean assemblage of a coastal upwelling ecosystem during El Niño 1997-98 and La Nina 1999." Progress in Oceanography 54(1-4): 279-291.

Berdalet, E., M. A. McManus, O. N. Ross, H. Burchard, F. P. Chavez, J. S. Jaffe, I. R. Jenkinson, R. Kudela, I. Lips, U. Lips, A. Lucas, D. Rivas, M. C. Ruiz-de la Torre, J. Ryan, J. M. Sullivan and H. Yamazaki (2014). "Understanding harmful algae in stratified systems: Review of progress and future directions." Deep Sea Research Part II: Topical Studies in Oceanography 101(0): 4-20.

Berelson, W., J. McManus, K. Coale, K. S. Johnson, D. Burdidge, T. Kilgore, D. Colodner, F. P. Chavez, R. Kudela and J. Boucher (2003). "A time series of benthic flux measurements from Monterey Bay, California." Continental Shelf Research 23: 457-481.

Berger, W. H. and C. B. Lange (1998). Silica depletion in the thermocline of the glacial North Pacific; corollaries and implications [Monograph] Topical studies in oceanography; studies of the California current system; Part 1. F. P. Chavez and C. A. Collins.

Bertrand, A., Gerlotto, F., Bertrand, S., Gutiérrez, M., Alza, L., Chipollini, A., Diaz, E., Espinoza, P., Ledesma, L., Quesquén, R., Peraltilla, S., Chavez., F.P. (2008). "Schooling behaviour and environmental forcing in relation to anchoveta distribution: an analysis across multiple spatial scales." Progress in Oceanography 79: 264-277.

Bertrand, A., A. Chaigneau, S. Peraltilla, J. Ledesma, M. Graco, F. Monetti and F. P. Chavez (2012). "Oxygen: A Fundamental Property Regulating Pelagic Ecosystem Structure in the Coastal Southeastern Tropical Pacific." Plos One 6(12): 8.

Bjorkstedt, E. P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, J. Peterson, R. Durazo, G. Gaxiola-Castro, F. Chavez, J. T. Pennington, C. A. Collins, J. Field, S. Ralston, K. Sakuma, S. J. Bograd, F. B. Schwing, Y. Xue, W. J. Sydeman, S. A. Thompson, J. A. Santora, J. Largier, C. Halle, S. Morgan, S. Y. Kim, K. P. B. Merkens, J. A. Hildebrand and L. M. Munger (2010). "State of the California current 2009-2010: Regional variation persists through transition from La Niña to El Niño (and back?)." California Cooperative Oceanic Fisheries Investigations Reports 51: 39-69.

Bjorkstedt, E. P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, W. T. Peterson, R. D. Brodeur, T. Auth, J. Fisher, C. Morgan, J. Peterson, J. Largier, S. J. Bograd, R. Durazo, G. Gaxiola-Castro, B. Lavaniegos, F. P. Chavez, C. A. Collins, B. Hannah, J. Field, K. Sakuma, W. Satterthwaite, M. O'Farrell, S. Hayes, J. Harding, W. J. Sydeman, S. A. Thompson, P. Warzybok, R. Bradley, J. Jahncke, R. T. Golightly, S. R. Schneider, R. M. Suryan, A. J. Gladics, C. A. Horton, S. Y. Kim, S. R. Melin, R. L. DeLong and J. Abell (2013). "State Of The California Current 2011-2012: Ecosystems Respond To Local Forcing As La Nina Wavers And Wanes." California Cooperative Oceanic Fisheries Investigations Reports 53: 41-76.

Bjorkstedt. E., R. Goericke, S. McClatchie, F. P. Chavez, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, R. Brodeur, J. Peterson, M. Litz, J. Gomez-Valdez, G. Gaxiola-Castro, B. Lavaniegos, C. A. Collins, J. Field, K. Sakuma, P. Warzybok, R. Bradley, J. Jahncke, S. Bograd, F. Schwing, G. S. Campbell, J. Hildebrand, W. Sydeman, S. A. Thompson, J. Largier, C. Halle, S. Y. Kim and J. Abell (2011). "State of the California Current 2010-2011. Regionally variable responses to a strong (but fleeting?) La Niña." California Cooperative Fisheries Investigation Reports 52: 36:68.

Bograd, S. C. G. C., E. Di Lorenzo, D. M. Palacios, H. Bailey, W. Gilly, F P. Chavez (2008). "Oxygen declines and the shoaling of the hypoxic boundary in the California Current." Geophysical Research Letters 35: L12607.

Brzezinski, M. A., D. R. Phillips, F. P. Chavez, G. E. Friederich and R. C. Dugdale (1997). "Silica production in the Monterey, California, upwelling system." Limnology and Oceanography 42(8): 1694-1705.

Buck, K. R. and F. P. Chavez (1994). "Diatom aggregates from the open ocean." Journal of Plankton Research 16(10): 1449-1457.

Buck, K. R., F. P. Chavez and L. Campbell (1996). "Basin-wide distributions of living carbon components and the inverted trophic pyramid of the central gyre of the North Atlantic Ocean, summer 1993." Aquatic Microbial Ecology 10: 283-298.

Buck, K. R., F. P. Chavez and A. S. Davis (2008). "Minidiscus trioculatus, a small diatom with a large presence in the upwelling systems of central California." Nova Hedwigia 133: 1-6.

Buck, K. R., F. P. Chavez and H. A. Thomsen (1991). "Choanoflagellates of the central California waters: Taxonomy, morphology and species assemblages." Ophelia 33(3): 179-186.

Buck, K. R., R. Marin and F. P. Chavez (2005). "Heterotrophic dinoflagellate fecal pellet production: grazing of large, chain-forming diatoms during upwelling events in Monterey Bay, California." Aquatic Microbial Ecology 40(3): 293-298.

Buck, K. R., L. Uttal-Cooke, C. H. Pilskaln, D. L. Roelke, M. C. Villac, G. A. Fryxell, L. Cifuentes and F. P. Chavez (1992). "Autecology of the diatom Pseudonitzschia australis, a domoic acid producer, from Monterey Bay, California." Marine Ecology Progress Series 84: 293-302.

Buitenhuis, E. T., W. K. W. Li, D. Vaulot, M. W. Lomas, M. Landry, F. Partensky, D. M. Karl, O. Ulloa, L. Campbell, S. Jacquet, F. Lantoine, F. Chavez, D. Macias, M. Gosselin and G. B. McManus (2012). "Picophytoplankton biomass distribution in the global ocean." Earth System Science Data Discussions 5: 221-242.

Carolan, M., J. M. Smith and J. M. Beman (2015). "Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone." Front Microbiol.

Carr, S. D., X. J. Capet, J. C. McWilliams, J. T. Pennington and F. P. Chavez (2008). "The influence of diel vertical migration on zooplankton transport and recruitment in an upwelling region: estimates from a coupled behavioral-physical model." Fisheries Oceanography 17(1): 1-15.

Castro, C. G., T. R. Baumgartner, S. Bograd, R. Castro, F. P. Chavez, C. A. Collins, R. Durazo, J. Garcy'a, G. Gaxiola-Castro, T. Hayward, A. Huyer, R. Lynn, A. S. Mascarenhas, M. R. D. Robert, R. L. Smith, P. A. Wheeler and F. A. Whitney (2002). "Introduction to 'The 1997-8 El Niño Atlas of oceanographic conditions along the west coast of North America (23°N-50°N)." Progress in Oceanography 54: 501-508.

Castro, C. G., F. P. Chavez and C. Collins (2001). "The role of the California Undercurrent in the export of denitrified waters from the eastern tropical North Pacific." Global Biogeochemical Cycles 21: 819-830.

Castro, C. G., C. A. Collins, J. T. Pennington, D. Zúñiga and F. P. Chavez (2011). "Spatial distribution and offshore export of total organic carbon along the eastern boundary of the Subtropical North Pacific." Advances in Oceanography and Limnology 2(2): 93-106.

Castro, C. G., C. A. Collins, P. Walz, J. T. Pennington, R. P. Michisaki, G. Friederich and F. P. Chavez (2002). "Nutrient variability during El Niño 1997-98 in the California current system off central California." Progress in Oceanography 54(1-4): 171-184.

Chai, F., M. S. Jiang, Y. Chao, R. C. Dugdale, F. Chavez and R. T. Barber (2007). "Modeling responses of diatom productivity and biogenic silica export to iron enrichment in the equatorial Pacific Ocean." Global Biogeochemical Cycles 21(3).

Chao, Y., Z. J. Li, J. C. Kindle, J. D. Paduan and F. P. Chavez (2003). "A high-resolution surface vector wind product for coastal oceans: Blending satellite scatterometer measurements with regional mesoscale atmospheric model simulations." Geophysical Research Letters 30(1): 1013.

Chao, Y. Z. L., J. Farrara, J. C. McWilliams, J. Bellingham, X. Capet, F. Chavez, J-K. Choi, R. Davis, J. Doyle, D. Frantaoni, P. Li, P. Marchesiello, M. A. Moline, J. Paduan, S. Ramp (2009). "Development, implementation and evaluation of a data-assimilative ocean forecasting system off the central California coast." Deep-Sea Research II.

Chavez, F. (2004). A Central California Ocean Observing System, CenCOOS. 2004 Ocean Sciences Meeting, AGU Abstract.

Chavez, F. and C. Collins (1998). "Studies of the California Current System." Deep Sea Research Part II: Topical Studies in Oceanography 45.

Chavez, F., R. Herlien, G. Thurmond and D. Wright (1993). A novel ocean acquisition system for interdisciplinary science (OASIS). WASHINGTON, DC ( ), MTS.

Chavez, F. P. (1987). Ocean variability and phytoplankton community structure, Duke University: 300.

Chavez, F. P. (1989). "Size distribution of phytoplankton in the central and eastern tropical Pacific." Global Biogeochemical Cycles 3(1): 27-35.

Chavez, F. P. (1990). Primary production in Monterey Bay, California: Rates and Fates. Western Society of Naturalists, 71st annual meeting. U.S.A.: 25.

Chavez, F. P. (1995). "A comparison of ship and satellite chlorophyll from California and Peru." Journal of Geophysical Research 100(C12): 24855-24862.

Chavez, F. P. (1996). "Forcing and biological impact of onset of the 1992 El Niño in central California." Geophysical Research Letters 23(3): 265-268.

Chavez, F. P. (1996). "Iron fertilization in the equatorial pacific." Nature 383: 496-501.

Chavez, F. P. (1998). California Current System off Central California, 1997-8. EOS Transactions, American Geophysical Union, Fall Meeting,.

Chavez, F. P. (2003). A constant sea of change: The biological response to variability. EOS Transactions, AGU Ocean Science Meeting Supplement.

Chavez, F. P. (2003). "A constant sea of change: The biological response to variability." Eos Trans. AGU, 84(52).

Chavez, F. P. (2005). Chapter 16 Biological consequences of interannual to multidecadal variability. The Sea. A. Robinson and K. Brink. Cambridge, Massachussetts, Harvard University Press. 13: 643-679.

Chavez, F. P. (2007). Variability, Multidecadal. Encyclopedia of Tidepools & Rocky Shores. M. W. Denny, Gaines, S. D. Berkeley, University of California Press: 608-611.

Chavez, F. P., A. Bertrand, R. Guevara, P. Soler, J. Csirke (2008). "The northern Humboldt Current System: brief history, present status and a view towards the future. ." Progress in Oceanography 79: 95-105.

Chavez, F. P. (2012). "Climate change and marine ecosystems." Proceedings of the National Academy of Sciences of the United States of America 109(47): 19045-19046.

Chavez, F. P. and R. T. Barber (1985). Plankton production during El Niño. International Conference on the TOGA Scientific Programme, Geneva, World Climate Research Publications, World Meteorological Organization.

Chavez, F. P. and R. T. Barber (1987). "An estimate of new production in the equatorial Pacific." Deep-Sea Research 34(7): 1229-1243.

Chavez, F. P., R. T. Barber, P. M. Kosro, A. Huyer, S. R. Ramp, T. P. Stanton and B. R. d. Mendiola (1991). "Horizontal transport and the distribution of nutrients in the coastal transition zone off Northern California: Effects on primary production, phytoplankton biomass and species composition." Journal of Geophysical Research 96(C8): 14833-14848.

Chavez, F. P., R. T. Barber and M. P. Sanderson (1989). The potential primary production of the Peruvian upwelling ecosystem, 1953-1984. The Peruvian upwelling ecosystem: Dynamics and interactions. D. Pauly, P. Muck, J. Mendo and I. Tsukayama. Manila, Philippines, International Center for Living Aquatic Resources Management: 50-63.

Chavez, F. P., R. T. Barber and H. Soldi S. (1984). "Propagated temperature changes during onset and recovery of the 1982-83 El Niño." Nature 309(5963): 47-49.

Chavez, F. P. and R. C. Brusca (1991). The Galapagos Islands and their relation to oceanographic processes in the tropical Pacific. Galapagos marine invertebrates. M. J. James. New York, Plenum Press: 9-33.

Chavez, F. P., K. R. Buck and R. T. Barber (1990). "Phytoplankton taxa in relation to primary production in the equatorial Pacific." Deep-Sea Research 37(11): 1733-1752.

Chavez, F. P., K. R. Buck, R. R. Bidigare, D. M. Karl, D. Hebel, M. Latasa, L. Campbell and J. Newton (1995). "On the chlorophyll a retention properties of glass-fiber GF/F filters." Limnology and Oceanography 40(2): 428-433.

Chavez, F. P., K. R. Buck, K. H. Coale, J. H. Martin, G. R. DiTullio, N. A. Welschmeyer, A. C. Jacobson and R. T. Barber (1991). "Growth rates, grazing, sinking, and iron limitation of equatorial Pacific phytoplankton." Limnology and Oceanography 36(8): 1816-1833.

Chavez, F. P., K. R. Buck, C. H. Pilskaln, J. N. Downs, N. A. Welschmeyer, R. A. Olivieri, A. Codispoti, A. Cohen and R. C. Dugdale (1991). On the relationships between primary production, food web structure, new production and particulate flux. Oceanography Society, Second Scientific Meeting, Program of Abstracts: 36.

Chavez, F. P., K. R. Buck, S. K. Service, J. Newton and R. T. Barber (1996). "Phytoplankton variability in the central and eastern tropical Pacific." Deep-Sea Research II 43(4-6): 835-870.

Chavez, F. P. and C. A. Collins (1998). "California current system - Part 1 - Preface." Deep-Sea Research Part II-Topical Studies in Oceanography 45(8-9): 1407-1409.

Chavez, F. P. and C. A. Collins (2000). "Corrigendum to "Studies of the California Current System Part 2"; [Deep-Sea Research II 47 (5-6), 2000]." Deep Sea Research Part II: Topical Studies in Oceanography 47: 1.

Chavez, F. P. and C. A. Collins (2000). "Studies of the California current system part 2." Deep-Sea Research II 47: 5-6.

Chavez, F. P. and C. A. Collins (2000). "Studies of the California current system: Present, past and future." Deep-Sea Research II 47: 761-763.

Chavez, F. P., C. A. Collins, A. Huyer and D. L. Mackas (2002). "El Niño along the west coast of North America." Progress in Oceanography 54: 1-5.

Chavez, F. P. and G. E. Friederich (1996). The role of primary production in the carbon cycle of coastal and open ocean upwelling systems. Caribbean Journal of Science: 305-306.

Chavez, F. P., G. E. Friederich, R. C. Dugdale and F. P. Wilkerson (1996). A study of the role in the air-sea flux of CO2 during the spring 1995 MBL experiment off Monterey Bay, California. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Chavez, F. P., R. Herlien, G. Thurmond, D. Wright and J. T. Pennington (1992). Real-time mooring systems for interdisciplinary oceanographic research. Autonomous Bio-Optical Ocean Observing Systems, Scientific Symposium. Monterey, CA.

Chavez, F. P., R. A. Herlien and G. D. Thurmond (1994). "OASIS - Acquisition system for moorings/drifters: Developed for interdisciplinary science, with multiple adaptable interfaces; tested on ATLAS moorings in Monterey Bay, California." Sea technology 35: 51-59.

Chavez, F. P., A. J. Hobday, P. Strutton, M. Gierach, M.-H. Radenac, F. Chai, P. Lehodey, K. Evans and R. Guevara (2014) "The tropical Pacific in relation to biological productivity and living resources." Intergovernmental Oceanographic Commission Volume, DOI:

Chavez, F. P., H. W. Jannasch, K. S. Johnson, C. M. Sakamoto, G. E. Friederich, G. D. Thurmond, R. A. Herlien and L. A. Codispoti (1991). The MBARI program for obtaining real-time measurements in Monterey Bay, Honolulu, IEEE.

Chavez, F. P., C. Mauriaca and C. A. Jerez (2009). "Constitutive and regulated expression vectors to construct polyphosphate deficient bacteria." BMC Research Notes 2.

Chavez, F. P. and M. Messié (2009). "A comparison of Eastern Boundary Upwelling Ecosystems." Progress in Oceanography 83(1-4): 80-96.

Chavez, F. P., M. Messié and J. T. Pennington (2011). "Marine primary production in relation to climate variability and change." Annual Review of Marine Science(3): 227-260.

Chavez, F. P., J. T. Pennington and K. R. Buck (1993). Temporal variability of phytoplankton in a coastal central California upwelling ecosystem. EOS Transactions, American Geophysical Union: 324.

Chavez, F. P., J. T. Pennington, C. G. Castro, J. P. Ryan, R. P. Michisaki, B. Schlining, P. Walz, K. R. Buck, A. McFadyen and C. A. Collins (2002). "Biological and chemical consequences of the 1997-98 El Niño in central California waters." Progress in Oceanography 54(1-4): 205-232.

Chavez, F. P., J. T. Pennington, R. Herlein, G. Thurmond, C. Sakamoto and K. R. Buck (1993). Forcing and biological impact of the 1992 El Niño in central California. Oceanography Society, Third Scientific Meeting, Program of Abstracts. Seattle, WA.

Chavez, F. P., J. T. Pennington, R. A. Herlien, H. W. Jannasch, G. D. Thurmond and G. E. Friederich (1997). "Moorings and drifters for real-time interdisciplinary oceanography." Journal of Atmospheric and Oceanic Technology 14: 1199-1211.

Chavez, F. P., J. T. Pennington, R. Michisaki and J. Ryan (2004). "The Monterey Bay Ocean Time-series and Observatory (MOTO) sheds light on multi-decadal basin-scale fluctuations of anchovies and sardines." Ecosystem Observations(Spring 2004): 20-21.

Chavez, F. P., J. T. Pennington, R. Michisaki and J. P. Ryan (2004). The Monterey Bay Ocean Time-Series and Observatory (MOTO) sheds light on multi-decadal basin-scale fluctuations of anchovies and sardines, Monterey Bay National Marine Sanctuary.

Chavez, F. P., J. T. Pennington, T. O'Reilly and G. E. Friederich (1996). "Scales of biological variability and the fate of primary production in the coast Central California ecosystem." EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Chavez, F. P., J. Ryan, S. E. Lluch-Cota and M. Niquen (2003). "From anchovies to sardines and back: Multidecadal change in the Pacific Ocean." Science 299(5604): 217-221.

Chavez, F. P., J. Ryan, S. E. Lluch-Cota and M. Niquen (2003). "Sardine fishing in the early 20th century - Response." Science 300(5628): 2033-2033.

Chavez, F. P., S. K. Service and S. E. Buttrey (1996). "Temperature-nitrate relationships in the central and eastern tropical Pacific." Journal of Geophysical Research 101(C9): 20553-20563.

Chavez, F. P., J. Sevadjian, C. Wahl, J. Friederich, B. Tougher, M. Fong and G. Friederich "Measurements of pCO2 and pH from an autonomous surface vessel in a coastal upwelling system." Submitted to Deep-Sea Research.

Chavez, F. P. and S. L. Smith (1995). Biological and chemical consequences of open ocean upwelling. Upwelling in the ocean: Modern processes and ancient records. C. P. Summerhayes, K.-C. Emeis, M. V. Angel, R. L. Smith and B. Zeitzschel. New York, John Wiley & Sons: 149-169.

Chavez, F. P., P. G. Strutton, G. E. Friederich, R. A. Feely, G. C. Feldman, D. G. Foley and M. J. McPhaden (1999). "Biological and chemical response of the Equatorial Pacific Ocean to the 1997-98 El Niño." Science 286: 2126-2131.

Chavez, F. P., P. G. Strutton and M. J. McPhaden (1998). "Biological-physical coupling in the central equatorial Pacific during the onset of the 1997-98 El Niño." Geophysical Research Letters 25(19): 3543-3546.

Chavez, F. P., T. Takahashi, W.-J. Cai, G. Friederich, B. Hales, R. Wanninkhof and R. A. Feely (2007). Coastal Oceans. The First State of the Carbon Cycle Report (SOCCR): The North American Carbon Budget and Implications for the Global Carbon Cycle. A. W. King, L. Dilling, G. P. Zimmermanet al. National Climatic Data Center, Asheville, NC, USA,, A Report by the U.S. Climate Change Science Program and the Subcommittee on Global Change Research[National Oceanic and Atmospheric Administration,]: 157-166.

Chavez, F. P., G. Thurmond, A. Pearce, S. P. Hayes and H. Milburn (1990). Physical and biological coupling in Monterey Bay and contiguous waters of the California Current. EOS Transactions, American Geophysical Union: 1350.

Chavez, F. P. and J. R. Toggweiler (1995). Physical estimates of global new production: The upwelling contribution. Upwelling in the ocean: Modern processes and ancient records. C. P. Summerhayes, K.-C. Emeis, M. V. Angel, R. L. Smith and B. Zeitzschel. New York, John Wiley & Sons: 313-320.

Chavez, F. P., D. Wright, R. Herlien, M. Kelley, F. Shane and P. G. Strutton (2000). "A device for protecting moored spectroradiometers from biofouling." Journal of Oceanographic and Atmospheric Technology 17: 215-219.

Coale, K. H., K. S. Johnson, F. P. Chavez, K. O. Buesseler, R. T. Barber, M. A. Brzezinski, W. P. Cochlan, F. J. Millero, P. G. Falkowski, J. E. Bauer, R. H. Wanninkhof, R. M. Kudela, M. A. Altabet, B. E. Hales, T. Takahashi, M. R. Landry, R. R. Bidigare, X. J. Wang, Z. Chase, P. G. Strutton, G. E. Friederich, M. Y. Gorbunov, V. P. Lance, A. K. Hilting, M. R. Hiscock, M. Demarest, W. T. Hiscock, K. F. Sullivan, S. J. Tanner, R. M. Gordon, C. N. Hunter, V. A. Elrod, S. E. Fitzwater, J. L. Jones, S. Tozzi, M. Koblizek, A. E. Roberts, J. Herndon, J. Brewster, N. Ladizinsky, G. Smith, D. Cooper, D. Timothy, S. L. Brown, K. E. Selph, C. C. Sheridan, B. S. Twining and Z. I. Johnson (2004). "Southern ocean iron enrichment experiment: Carbon cycling in high- and low-Si waters." Science 304(5669): 408-414.

Coale, K. H., K. S. Johnson, S. E. Fitzwater, R. M. Gordon, S. Tanner, F. P. Chavez, L. Ferioli, C. M. Sakamoto, P. Rogers, F. Millero, P. Steinberg, P. Nightingale, D. Cooper, W. P. Cochlan, M. R. Landry, J. Constantinou, G. Rollwagen, A. Trasvina and R. M. Kudela (1996). "A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean." Nature 383: 495-501.

Collins, C. A., S. Bollens, F P Chavez, D Krynen, J Paduan, T A Rago C Szczechowski (1998). Results of 1997 Hydrographic Measurements off Central California. 1998 Ocean Sciences Meeting, OS149., EOS Transactions, American Geophysical Union,.

Collins, C. A., C. G. Castro, H. Asanuma, T. A. Rago, S. K. Han, R. Durazo and F. P. Chavez (2002). "Changes in the hydrography of Central California waters associated with the 1997-98 El Niño." Progress in Oceanography 54(1-4): 129-147.

Collins, C. A., J. T. Pennington, C. G. Castro, T. A. Rago and F. P. Chavez (2003). "The California Current system off Monterey, California: physical and biological coupling." Deep-Sea Research Part Ii-Topical Studies in Oceanography 50(14-16): 2389-2404.

Conaway, C. H., F. J. Black, M. Gault-Ringold, J. T. Pennington, F. P. Chavez and A. R. Flegal (2009). "Dimethylmercury in coastal upwelling waters, Monterey Bay, California." Environmental Science and Technology 43(5): 1305-1309.

Cosca, C. E., R. A. Feely, J. Boutin, J. Etcheto, M. J. McPhaden, F. P. Chavez and P. G. Strutton (2003). "Seasonal and interannual CO2 fluxes for the central and eastern equatorial Pacific Ocean as determined from fCO(2)-SST relationships." Journal of Geophysical Research-Oceans 108(C8): 10.

Croll, D. A., B. Marinovic, S. Benson, F. P. Chavez, N. Black, R. Ternullo and B. R. Tershy (2005). "From wind to whales: trophic links in a coastal upwelling system." Marine Ecology-Progress Series 289: 117-130.

Cross, P. S. (1993). A comparison of Modeled and observed ocean mixed layer behavior in a sea breez influenced coastal region. Oceanography. Monterey, CA, Naval Postgraduate School: 113.

Cross, P. S., L. K. Rosenfeld and C. H. Wash (1994). A comparison of modeled and observed ocean mixed layer behavior in a sea breeze influenced coastal region. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 53.

Cuvelier, M. L., A. E. Allen, A. Monier, J. P. McCrow, M. Messié, S. G. Tringe, T. Woyke, R. M. Welsh, T. Ishoey, J. H. Lee, B. J. Binder, C. L. DuPont, M. Latasa, C. Guigand, K. R. Buck, J. Hilton, M. Thiagarajan, E. Caler, B. Read, R. S. Lasken, F. P. Chavez and A. Z. Worden (2010). "Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton." Proceedings of the National Academy of Sciences of the United States of America 107(33): 14679-14684.

Das, J., T. Maughan, M. McCann, M. Godin, T. O’Reilly, M. Messié, F. Bahr, K. Gomes, F. Py, J. Bellingham, G. S. Sukhatme and K. Rajan (2011). Towards mixed-initiative, multi-robot field experiments: design, deployment, and lessons learned. International Conference on Intelligent Robots and Systems (IROS), San Francisco, USA.

Das, J., F. Py, T. Maughan, T. O'Reilly, M. Messié, J. Ryan, G. S. Sukhatme and K. Rajan (2012). "Coordinated sampling of dynamic oceanographic features with underwater vehicles and drifters." International Journal of Robotics Research 31: 626-646.

De Brabandere, L., D. E. Canfield, T. Dalsgaard, G. E. Friederich, N. P. Revsbech, O. Ulloa and B. Thamdrup (2013). "Vertical partitioning of nitrogen-loss processes across the oxic-anoxic interface of an oceanic oxygen minimum zone." Environmental Microbiology.

De La Cruz-Orozco, M. E., G. Gaxiola-Castro, J. Garcia-Cordova, G. Friederich, F. Chavez, J.Gomez-Valdes (2007). Presion parcial del bioxido de carbono (pCO2) frente a Baja California. Mexico, Instituto National Ecological, Mexico, DF.

DeLong, E. F. (2001). "On the psychological instability of time series proponents." Acta Retracta 345(1-2001).

Doney, S., A. Rosenburg, M. Alexander, F. Chavez, C. D. Harvell, G. Hoffman, M. Orback and M. Rucklehaus (2014). Oceans and Marine Resources. Climate Change Impacts in the United States: The Third National Climate Assessment J. M. Melillo, T. T. C. Richmond and G. W. Yohe: 557-578.

Dugdale, R., F. Wilkerson, D. Halpern, F. Chavez and R. Barber (1994). "Remote sensing of seasonal and annual variation of equatorial new production: A model for global estimates." Advances in Space Research 14(1): 169-178.

Dugdale, R. C., G. E. Friederich, F. P. Chavez, J. T. Pennington, F. P. Wilkerson and T. P. Hayden (1996). Air-sea fluxes of CO2 in coastal upwelling: An overview of the Monterey Bay CoOP experiment. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Dugdale, R. C., G. E. Friederich, F. P. Chavez, J. T. Pennington, F. P. Wilkerson and T. P. Hayden (1996). Spatial distribution of new production on Monterey Bay during CoOP95: Implications for CO2 air-sea flux. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Dugdale, R. C., F. P. Wilkerson, R. T. Barber and F. P. Chavez (1992). "Estimating new production in the equatorial Pacific Ocean at 150øW." Journal of Geophysical Research 97(C1): 681-686.

Elrod, V. A., K. S. Johnson, F. P. Chavez, S. E. Fitzwater, T. Pennington, K. R. Buck and P. M. Walz (2002). Iron in the MBARI Monterey Bay Time Series. 2002 Fall Meeting, AGU Abstract.

Eppley, R. W., F. P. Chavez and R. T. Barber (1992). "Standing stocks of particulate carbon and nitrogen in the equatorial Pacific at 150øW." Journal of Geophysical Research 97(C1): 655-661.

Evans, W., P. G. Strutton and F. P. Chavez (2009). "Impact of tropical instability waves on nutrient and chlorophyll distributions in the equatorial Pacific." Deep-Sea Research Part I: Oceanographic Research Papers 56(2): 178-188.

Feely, R. A., R. Wanninkhof, C. E. Cosca, M. J. McPhaden, R. H. Byrne, F. J. Millero, F. P. Chavez, T. Clayton, D. M. Campbell and P. P. Murphy (1994). "The effect of tropical instability waves on CO 2 species distributions along the equator in the eastern equatorial Pacific during the 1992 ENSO event." Geophysical Research Letters 21(4): 277-280.

Fiechter, J., E. N. Curchitser, C. A. Edwards, F. Chai, N. L. Goebel and F. P. Chavez (2014). "Air-sea CO2 fluxes in the California Current: Impacts of model resolution and coastal topography." Global Biogeochemical Cycles 28(4): 2013GB004683.

Fiedler, P. C., F. P. Chavez, D. W. Behringer and S. B. Reilly (1992). "Physical and biological effect of Los Ni¤os in the eastern tropical Pacific, 1986-1989." Deep-Sea Research 39(2): 199-219.

Fiedler, P. C., V. Philbrick and F. P. Chavez (1991). "Oceanic upwelling and productivity in the eastern tropical Pacific." Limnology and Oceanography 36(8): 1834-1850.

Field, D., D. Cayan and F. Chavez (2006). "Secular warming in the California current and North Pacific." California Cooperative Oceanic Fisheries Investigations Reports 47: 92-108.

Field, D. B., C. Lange, D. Cayan, F. Chavez, M. Dalton, P. Smith (2008). Sardines and anchovies: Natural variations and fisheries in complex ocean environments. Using the Past to Inform the Future: The Known, Unknown, and Unknowable (KUU) Conference 2003. E. S. J.B.J. Jackson. Chicago, Chicago University Press.

Field, D. B., T.R. Baumgartner, V. Ferreira, D. Gutierrez, H. Lozano-Montes, R. Salvatteci, and A. Soutar (2008). Variability in small pelagic fishes from scales in marine sediments and other historical records. Climate Change and Small Pelagic Fish. D. M. Checkley, C. Roy, J. Alheit, Y. Oozeki. Cambridge, Cambridge University Press: Chapter 4.

Finney, B., J. Alheit, K.-C. Emeis, D.B. Field, D. Gutierrez and U. Struck (2008). "Paleoecological Studies on Variability in Marine Fish Populations: A Long-Term Perspective on the Impacts of Climatic Change on Marine Fisheries." Progress in Oceanography.

Fischer, A., Ryan, J., Rienecker, E. (2007). Tidally-forced exchange between Elkhorn Slough and Monterey Bay. EPOC. Presentation. September, Leavenworth, WA.

Fishman, J., L. T. Iraci, J. Al-Saadi, K. Chance, F. Chavez, M. Chin, P. Coble, C. Davis, P. M. DiGiacomo, D. Edwards, A. Eldering, J. Goes, J. Herman, C. Hu, D. J. Jacob, C. Jordan, S. R. Kawa, R. Key, X. Liu, S. Lohrenz, A. Mannino, V. Natraj, D. Neil, J. Neu, M. Newchurch, K. Pickering, J. Salisbury, H. Sosik, A. Subramaniam, M. Tzortziou, J. Wang and M. Wang (2013). "The United States' Next Generation Of Atmospheric Composition And Coastal Ecosystem Measurements NASA's Geostationary Coastal And Air Pollution Events (GEO-CAPE) Mission." Bulletin of the American Meteorological Society 93(10): 1547-+.

Fitzwater, S. E., K. S. Johnson, V. A. Elrod, J. P. Ryan, L. J. Coletti, S. J. Tanner, R. M. Gordon and F. P. Chavez (2003). "Iron, nutrient and phytoplankton biomass relationships in upwelled waters of the California coastal system." Continental Shelf Research 23: 1523-1544.

Foster, M. D. (1993). Evolution of diurnal surface winds and surface currents for Monterey Bay, 1993. Oceanography. Monterey, CA, Naval Postgraduate School: 100.

Foster, M. D., C. Wash, J. D. Paduan and L. K. Rosenfeld (1994). Evolution of diurnal surface winds and CODAR-derived surface currents for Monterey Bay. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 52.

Freon, P. C. W., Chavez, F. P. (2009). Conjectures on the influence of climate change on ocean ecosystems dominated by small pelagic fish. Predicted effects of climate change on SPACC systems. C. R. D. Checkley, J. Alheit Cambridge, Cambridge University Press: 312-343.

Friederich, G. E. (1994). Sea surface pCO2 measurements in a coastal upwelling system. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 69.

Friederich, G. E., F P Chavez, P G. Strutton and P M. Walz (1998). Bio-optical and Carbon Dioxide Time Series from Moorings in the Equatorial Pacific during 1997-1998. EOS Transactions, American Geophysical Union, 1998 Fall Meeting.

Friederich, G. E., J. Ledesma, O. Ulloa, F.P. Chavez (2008). "Air-Sea carbon dioxide fluxes in the coastal southeastern tropical Pacific." Progress in Oceanography 79: 156-166.

Friederich, G. E., P. G. Brewer and R. A. Herlein (1993). Measurement of carbon dioxide partial pressure (pCO2) at the sea surface on a moored buoy. Oceanographic Society, Third Scientific Meeting, Program of Abstracts. Seattle, WA: 203.

Friederich, G. E., P. G. Brewer, R. A. Herlien and F. P. Chavez (1995). "Measurement of sea surface partial pressure of CO 2 from a moored buoy." Deep-Sea Research I 42(7): 1175-1186.

Friederich, G. E., F. P. Chavez and R. C. Dugdale (1996). Inorganic carbon and nutrient utilization in the central California upwelling system during the CoOP 95 experiment. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Friederich, G. E., C. M. Sakamoto, J. T. P. and F. P. Chavez (1994). Global fluxes fo carbon and its related substances in the coastal sea-ocean-atmosphere system, Sapporo Japan.

Friederich, G. E., C. M. Sakamoto, J. T. Pennington and F. P. Chavez (1994). On the direction of the air-sea flux of CO 2 in coastal upwelling systems, Sapporo Hokkaido, Japan, Japan National Committee for the IGBP.

Friederich, G. E., P. M. Walz, M. G. Burczynski and F. P. Chavez (2002). "Inorganic carbon in the central California upwelling system during the 1997-1999 El Niño-La Nina event." Progress in Oceanography 54(1-4): 185-203.

Frolov, S., J. P. Ryan and F. P. Chavez (2012). "Predicting euphotic-depth-integrated chlorophyll-a from discrete-depth and satellite-observable chlorophyll-a off central California." Journal of Geophysical Research-Oceans 117: 7.

Gierach, M. M., M. Messié, T. Lee, K. B. Karnauskas and M.-H. Radenac (2013). "Biophysical responses near equatorial islands in the Western Pacific Ocean during El Niño/La Niña transitions." Geophysical Research Letters 40(20): 2013GL057828.

Goericke, R., E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, A. Huyer, R. L. Smith, P. A. Wheeler, R. Hooff, W. T. Peterson, F. Chavez, C. Collins, B. Marinovic, N. Lo, G. Gaxiola-Castro, R. Durazo, K. D. Hyrenbach and W. J. Sydeman (2005). "The state of the California current, 2004-2005: Still cool?" California Cooperative Oceanic Fisheries Investigations Reports 46: 32-71.

Gomes, K., D. Cline, D. Edgington, M. Godin, T. Maughan, M. McCann, T. O'Reilly, F. Bahr, F. Chavez, M. Messié, J. Das and K. Rajan (2013). ODSS: A Decision Support System for Ocean Exploration. 29th IEEE International Conference on Data Engineering (ICDE), Brisbane, Australia, IEEE.

Gomez, F., A. Montecinos, S. Hormazabal, L. A. Cubillos, M. Correa-Ramirez and F. P. Chavez (2012). "Impact of spring upwelling variability off southern-central Chile on common sardine (Strangomera bentincki) recruitment." Fisheries Oceanography: no-no.

Gray, S. E. C., M. D. DeGrandpre, T. S. Moore, T. R. Martz, G. E. Friederich and K. S. Johnson (2011). "Applications of in situ pH measurements for inorganic carbon calculations." Marine Chemistry 125(1-4): 82-90.

Graybeal, J., J. G. Bellingham and F. P. Chavez (2005). "Data systems for ocean observation programs." Sea Technology 46(9): 23-+.

Greer, A. T., R. K. Cowen, C. M. Guigand, M. A. McManus, J. C. Sevadjian and A. H. V. Timmerman (2013). "Relationships between phytoplankton thin layers and the fine-scale vertical distributions of two trophic levels of zooplankton." Journal of Plankton Research 35(5): 939-956.

Guo, L., F. Chai, P. Xiu, H. Xue, S. Rao, Y. Liu and F. P. Chavez (2014). "Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study." Ocean Dynamics 64(8): 1137-1152.

Gutiérrez, D., A. Sifeddine, D. B. Field, L. Ortlieb, G. Vargas, F. Chávez, F.P. Velazco, V. Ferreira, P. Tapia, R. Salvatteci, H. Boucher, M. C. Morales, J. Valdés, J.-L. Reyss, A. Campusano, M. Boussafir, M. Mandeng-Yogo, M. García, T. Baumgartner (2009). "Rapid reorganization in ocean biogeochemistry off Peru towards the end of the Little Ice Age." Biogeosciences.

Hales, B., P. G. Strutton, M. Saraceno, R. Letelier, T. Takahashi, R. Feely, C. Sabine and F. Chavez (2012). "Satellite-based prediction of pCO2 in coastal waters of the eastern North Pacific." Progress in Oceanography.

Haley Jr. P.J., P.F.J. Lermusiaux, A.R. Robinson, W.G. Leslie, O. Logoutov, G. Cossarini, X.S. Liang, P. Moreno, S.R. Ramp, J.D. Doyle, J. Bellingham, F. Chavez and S. Johnston (2009). "Forecasting and reanalysis in the Monterey Bay/California Current region for the Autonomous Ocean Sampling Network-II experiment." Deep-Sea Research II.

Hayward, T. L., S. L. Cummings, D. R. Cayan, F. P. Chavez, R. J. Lynn, A. W. Mantyla, P. P. Niiler, F. B. Schwing, R. R. Veit and E. L. Venrick (1996). "The state of the California Current in 1995-96: Continuing declines in macrozooplankton biomass during a period of nearly normal circulation." California Cooperative Oceanic Fisheries Investigatins, Report 37: 22-37.

Hendricks, M. B., M. L. Bender, B. A. Barnett, P. Strutton and F. P. Chavez (2005). "Triple oxygen isotope composition of dissolved O-2 in the equatorial Pacific: A tracer of mixing, production, and respiration." Journal of Geophysical Research-Oceans 110(C12): 17.

Herlien, R. A., J. T. Pennington, G. Thurmond and F. P. Chavez (1993). An Ocean Acquisition System for Interdisciplinary Science (OASIS). EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 87.

Hicks, M. R. (1992). Alongshore sub-thermocline current variability in the central California Current System. Oceanography. Monterey, CA, Naval Postgraduate School: 111.

Hiromi, A., F. Chavez, C. Collins, R. Michisaki and T. Rago (1998). Hydrography of the California Current System off Central California. 1997-8 EOS Transactions, American Geophysical Union, 1998 Fall Meeting.

Ho, D., V. Engel, S. Ferron, G. Friederich, J. Barr and R. Wanninkhof (2014). Carbon cycling in a mangrove-dominated estuary of Everglades National Park, Florida, USA. EGU General Assembly 2014, Vienna, Austria, Copernicus.

Hopcroft, R. R., C. Clarke and F. P. Chavez (2002). "Copepod communities in Monterey Bay during the 1997-1999 El Niño and La Nina." Progress in Oceanography 54(1-4): 251-264.

Hopcroft, R. R., J. C. Roff and F. P. Chavez (2001). "Size paradigms in copepod communities: a re-examination." Hydrobiologia 453(1-3): 133-141.

Hughes, B. B., M. D. Levey, M. C. Fountain, A. B. Carlisle, F. P. Chavez and M. G. Gleason (2015). "Climate mediates threats to fish diversity and nursery function at the land-sea interface." Proceedings of the National Academy of Sciences USA. 112: 8025-8030.

Huyer, A., P. M. Kosro, J. Fleischbein, S. R. Ramp, T. Stanton, L. Washburn, F. P. Chavez, T. J. Cowles, S. D. Pierce and R. L. Smith (1991). "Currents and water masses of the coastal transition zone off Northern California, June to August 1988." Journal of Geophysical Research 96(C8): 14809-14831.

Jahnke, R., L. Atkinson, J. Barth, F. P. Chavez, K. Daly, J. Edson, P. Franks, J. O'Donnell and O. Schofield (2002). Coastal ocean processes and observatories: Advancing coastal research., Skidaway Institute of Oceanography.

Jannasch, H. W., G. E. Friederich, C. M. Sakamoto and K. S. Johnson (1993). The MBARI chemical instrumentation program. MarChem 1993 Workshop on Marine Chemistry. Steamboat Springs, CO.

Jannasch, H. W. and K. S. Johnson (1993). Long-term in situ osmotically pumped nitrate analyzers. Oceanographic Society, Third Scientific Meeting, Program of Abstracts. Seattle, WA: 97.

Jannasch, H. W., K. S. Johnson and C. M. Sakamoto (1992). Long-term in situ nitrate analyzers using osmotic pumps. Autonomous Bio=optical ocean observing systems.

Jannasch, H. W., K. S. Johnson and C. M. Sakamoto (1994). Continuous nitrate measurments obtained by osmotically pumped in situ long-term analyzers. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 45.

Jannasch, H. W., K. S. Johnson and C. M. Sakamoto (1994). "Submersible, ostmotically pumped analyzers for continuous determination of nitrate in situ." Analytical Chemistry 66(20): 3352-3361.

Johnson, K. S., F. P. Chavez, V. A. Elrod, S. E. Fitzwater, J. T. Pennington, K. R. Buck and P. M. Walz (2001). "The annual cycle of iron and the biological response in central California coastal waters." Geophysical Research Letters 28: 1,247-1,250.

Johnson, K. S., F. P. Chavez and G. E. Friederich (1999). "Continental-shelf sediment as a primary source of iron for coastal phytoplankton." Nature 398: 697-700.

Johnson, K. S., L. J. Coletti and F. P. Chavez (2006). "Diel nitrate cycles observed with in situ sensors predict monthly and annual new production." Deep-Sea Research Part I-Oceanographic Research Papers 53(3): 561-573.

Johnson, K. S., V. A. Elrod, S. E. Fitzwater, J. N. Plant, F. P. Chavez, S. J. Tanner, R. M. Gordon, D. L. Westphal, K. D. Perry, J. F. Wu and D. M. Karl (2003). "Surface ocean-lower atmosphere interactions in the Northeast Pacific Ocean Gyre: Aerosols, iron, and the ecosystem response." Global Biogeochemical Cycles 17(2).

Johnson, K. S. and H. W. Jannasch (1994). "Analytical chemistry under the sea surface: monitoring ocean chemistry in situ " Naval Research Reviews XLVI(3): 4-12.

Johnson, K. S., C. K. Paull, J. P. Barry and F. P. Chavez (2001). "A decadal record of underflows from a coastal river into the deep sea." Geology 29(11): 1,019-1,022.

Johnston, T. M. S., O. M. Cheriton, J. T. Pennington and F. P. Chavez (2009). "Thin phytoplankton layer formation at eddies, filaments, and fronts in a coastal upwelling zone." Deep-Sea Research Part II: Topical Studies in Oceanography 56(3-5): 246-259.

Jolliff, J. K., R. W. Gould Jr., B. Penta, W. J. Teague, S. deRada, F. P. Chavez and R. A. Arnone (2012). "Water mass bio-optical properties in the Monterey Bay region: Fluorescence-based inference of shifts in phytoplankton photophysiology." Journal of Geophysical Research.

Kavanaugh, M. T., M. J. Oliver, F. P. Chavez, R. M. Letelier, F. E. Muller-Karger and S. C. Doney (2016). "Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation." ICES Journal of Marine Science.

Kindle, J. C., R. M. Hodur, S. deRada, J. D. Paduan, L. K. Rosenfeld and F. Q. Chavez (2002). "A COAMPS (TM) reanalysis for the Eastern Pacific: Properties of the diurnal sea breeze along the central California coast." Geophysical Research Letters 29(24).

Knepp, T. N., J. Bottenheim, M. Carlsen, D. Carlson, D. Donohoue, G. Friederich, P. A. Matrai, S. Netcheva, D. K. Perovich, R. Santini, P. B. Shepson, W. Simpson, T. Valentic, C. Williams and P. J. Wyss (2010). "Development of an autonomous sea ice tethered buoy for the study of ocean-atmosphere-sea ice-snow pack interactions: the O-buoy." Atmospheric Measurement Techniques 3(1): 249-261.

Kosro, P. M., A. Huyer, S. R. Ramp, R. L. Smith, F. P. Chavez, T. J. Cowles, M. R. Abbott, P. T. Strub, R. T. Barber, P. Jessen and L. F. Small (1991). "The structure of the transition zone between coastal waters and the open ocean off Northern California, winter and spring 1987." Journal of Geophysical Research 96(C8): 14707-14730.

Kroeker, K. J., E. Sanford, J. M. Rose, C. A. Blanchette, F. Chan, F. P. Chavez, B. Gaylord, B. Helmuth, T. M. Hill, G. E. Hofmann, M. A. McManus, B. A. Menge, K. J. Nielsen, P. T. Raimondi, A. D. Russell and L. Washburn (2016). "Interacting environmental mosaics drive geographic variation in mussel performance and species interactions." Ecology Letters.

Kudela, R. M. and F. P. Chavez (1996). "Bio-optical properties in relation to an algal bloom caused by iron enrichment in the equatorial Pacific." Geophysical Research Letters 23(25): 3751-3754.

Kudela, R. M. and F. P. Chavez (1997). "Estimating new production from the quantum yield of nitrate uptake." SPIE 2963: 471-476.

Kudela, R. M. and F. P. Chavez (2000). "Modeling the impact of the 1992 El Niño on new production in Monterey Bay, California." Deep-Sea Research Part II: Topical Studies in Oceanography 47: 1055-1076.

Kudela, R. M. and F. P. Chavez (2002). "Multi-platform remote sensing of new production in central California during the 1997-1998 El Niño." Progress in Oceanography 54(1-4): 233-249.

Kudela, R. M. and F. P. Chavez (2004). "The impact of coastal runoff on ocean color during an El Niño year in Central California." Deep-Sea Research Part Ii-Topical Studies in Oceanography 51(10-11): 1173-1185.

Kudela, R. M., W. P. Cochlan and R. C. Dugdale (1997). "Carbon and nitrogen uptake response to light by phytoplankton during an upwelling event." Journal of Plankton Research 19(5): 609-630.

Leinweber, A., N. Gruber, H. Frenzel, G. E. Friederich and F. P. Chavez (2009). "Diurnal carbon cycling in the surface ocean and lower atmosphere of Santa Monica Bay, California." Geophysical Research Letters 36(8).

Lenarz, W. H., D. A. Ventresca, W. M. Graham, F. B. Schwing and F. P. Chavez (1995). "Explorations of El Niño and associated biological population dynamics off central California." California Cooperative Oceanic Fisheries Investigations, Report 36: 106-119.

Lester, S. E., K. L. McLeod, H. Tallis, M. Ruckelshaus, B. S. Halpern, P. S. Levin, F. P. Chavez, C. Pomeroy, B. J. McCay, C. Costello, S. D. Gaines, A. J. Mace, J. A. Barth, D. L. Fluharty and J. K. Parrish (2010). "Science in support of ecosystem-based management for the US West Coast and beyond." Biological Conservation 143(3): 576-587.

Lin, G., F. Chai, P. Xiu, Y. Liu, S. Rao and F. P. Chavez (2014). "Seasonal dynamics of physical and biological processes in the central California Current System: A modeling study." Ocean Dynamics.

Marinovic, B., D. A. Croll, N. Gong, S. Benson and F. P. Chavez (2002). "Effects of the 1997-98 El Niño on zooplankton within the Monterey Bay coastal upwelling system with emphasis on the euphausiid community." Progress in Oceanography 54: 265-277.

Marinovic, B. B., D. A. Croll, N. Gong, S. R. Benson and F. P. Chavez (2002). "Effects of the 1997-1999 El Niño and La Nina events on zooplankton abundance and euphausiid community composition within the Monterey Bay coastal upwelling system." Progress in Oceanography 54(1-4): 265-277.

Martin, J. H., K. H. Coale, K. S. Johnson, S. E. Fitzwater, R. M. Gordon, S. J. Tanner, C. N. Hunter, V. A. Elrod, J. L. Nowicki, T. L. Coley, R. T. Barber, S. Lindley, A. J. Watson, K. A. Van Scoy, C. S. Law, M. I. Liddicoat, R. Ling, T. Stanton, J. Stockel, C. Collins, A. Anderson, R. R. Bidigare, M. Ondrusek, M. Latasa, F. J. Millero, K. Lee, W. Yao, J. Z. Zhang, G. E. Friederich, C. M. Sakamoto, F. Chavez, K. R. Buck, Z. S. Kolber, R. M. Greene, P. G. Falkowski, S. W. Chisholm, F. Hoge, R. Swift, J. Yungel, S. Turner, P. Nightingale, A. Hatton, P. Liss and N. W. Tindale (1994). "Testing the iron hypothesis in ecosystems of the equatorial Pacific Ocean." Nature 371: 123-129.

McCann, M., R. Schramm, D. Cline, R. Michisaki, J. Harvey and J. Ryan (2014). Using STOQS (The spatial temporal oceanographic query system) to manage, visualize, and understand AUV, glider, and mooring data. Autonomous Underwater Vehicles (AUV), 2014 IEEE/OES.

McLaughlin, K., F. P. Chavez, J. T. Pennington and A. Paytan (2006). "A time series investigation of the oxygen isotopic composition of dissolved inorganic phosphate in Monterey Bay, California." Limnol. Oceanogr. 51(5): 2370–2379.

Melton, D. C. (1995). Remote sensing and validation of surface currents from HF radar. Oceanograpy. Monterey, CA, Naval Postgraduate School: 66.

Messié, M., R. Calienes, J. Ledesma, R.T. Barber, J.T. Pennington and F.P. Chavez (2008). Interannual variability and long term trends in eastern Pacific upwelling ecosystems. Ocean Sciences. Presentation. Mar 2008, Orlando, Florida.

Messié, M., J. Ledesma, D. Kolber, F.P. Chavez (2008). Nitrate supply and potential primary productivity estimates in four eastern boundary upwelling systems. Eastern boundary upwelling ecosystems. Presentation. June 2008, Las Palmas, Spain.

Messié, M., R. Calienes, J. Ledesma, R.T. Barber, J.T. Pennington, F.P. Chavez (2008). Physical/biological variability and interactions at the decadal scale in eastern Pacific upwelling ecosystems. CLIMECO Workshop. Poster. April 2008, Brest, France.

Messié, M. and F. Chavez (2011). "Global Modes of Sea Surface Temperature Variability in Relation to Regional Climate Indices." Journal of Climate 24(16): 4314-4331.

Messié, M. and F. P. Chavez (2012). "A global analysis of ENSO synchrony: the oceans biological response to physical forcing." Journal of Geophysical Research.

Messié, M. and F. P. Chavez (2013). "Physical-biological synchrony in the global ocean associated with recent variability in the central and western equatorial Pacific." Journal of Geophysical Research 118(8): 3782-3794.

Messié, M. and F. P. Chavez (2015). "Seasonal regulation of primary production in eastern boundary upwelling systems." Progress in Oceanography 134(0): 1-18.

Messié, M., J. Ledesma, D. D. Kolber, R. P. Michisaki, D. G. Foley and F. P. Chavez (2009). "Potential new production estimates in four eastern boundary upwelling ecosystems." Progress in Oceanography 83(1-4): 151-158.

Miljutin, D., M. Miljutina and M. Messié (2015). "Changes in abundance and community structure of nematodes from the abyssal polymetallic nodule field, Tropical Northeast Pacific." Deep-Sea Research Part I: Oceanographic Research Papers 106: 126-135.

Miller, A. J., J. C. McWilliams, N. Schneider, J. S. Allen, J. A. Barth, R. C. Beardsley, F. P. Chavez, T. K. Chereskin, C. A. Edwards, R. L. Haney, K. A. Kelly, J. C. Kindle, L. N. Ly, J. R. Moisan, M. A. Noble, P. P. Niiler, L. Y. Oey, F. B. Schwing, R. K. Shearman and M. S. Swenson (1999). "Observing and modeling the California Current System." EOS 80(45): 533-539.

Morvillez, T. (1997). Monitoring Temperature Variability using Acoustic Tomography along the California Coast. Oceanographic. Monterey, Naval Postgraduate School: 34.

Muller-Karger, F. E., M. T. Kavanaugh, E. Montes, W. M. Balch, M. Breitbart, F. P. Chavez, S. C. Doney, E. M. Johns, R. M. Letelier, M. W. Lomas, H. M. Sosik and A. E. White (2014). "A framework for a marine biodiversity observing network within changing continental shelf seascapes." Oceanography 27(2): 18–23.

Ohman, M. D., G.E. Durbin, J. Runge, B.K. Sullivan, D.B. Field (2008). "Relationship of predation potential to mortality of Calanus finmarchicus on Georges Bank, northwest Atlantic." Limnology and Oceanography 53(4): 1643-1655.

Olivieri, R. A. (1996). Plankton dynamics and the fate of primary production in the coastal upwelling ecosystem of Monterey Bay, CA. Marine Biology. Santa Cruz, CA, University of California at Santa Cruz: 316.

Olivieri, R. A. and F. P. Chavez (2000). "A model of plankton dynamics for the coastal upwelling system of Monterey Bay, California." Deep-Sea Research II 47: 1077-1106.

Olivieri, R. A., A. Cohen and F. P. Chavez (1993). An ecosystem model of Monterey Bay, California. Trophic models of aquatic ecosystems. V. Christensen and D. Pauly. Manila, Philippines, ICLARM Conference Proceedings: 315-322.

Orsi, W. D., J. M. Smith, H. M. Wilcox, J. E. Swalwell, P. Carini, A. Z. Worden and A. E. Santoro (2015). "Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter." ISME J.

Osborn, D. A., M. W. Silver, C. G. Castro, S. M. Bros and F. P. Chavez (2007). "The habitat of mesopelagic scyphomedusae in monterey bay, California." Deep-Sea Research Part I-Oceanographic Research Papers 54(8): 1241-1255.

Ottesen, E. A., C. R. Young, J. M. Eppley, J. P. Ryan, F. P. Chavez, C. A. Scholin and E. F. DeLong (2013). "Pattern and synchrony of gene expression among sympatric marine microbial populations." Proceedings of the National Academy of Sciences of the United States of America 110(6): E488-E497.

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Paduan, J. D., M. S. Cook and D. M. Fernandez (1997). Two-dimensional diurnal to monthly period surface currents in Monterey Bay from CODAR-type HF radar. IEEE International Geoscience and Remote Sensing Symposium, Singapore, IEEE.

Paduan, J. D., K. C. Kim, M. S. Cook and F. P. Chavez (2006). "Calibration and validation of direction-finding high-frequency radar ocean surface current observations." IEEE Journal of Oceanic Engineering 31(4): 862-875.

Paduan, J. D., E. T. Petruncio, D. E. Barrick and B. J. Lipa (1995). Surface currents within and offshore of Monterey Bay as mapped by a multiple-site HF radar (CODAR) network. IEEE Fifth Working conference on Current Measurement, IEEE.

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Paerl, R. W., K. S. Johnson, R. M. Welsh, A. Z. Worden, F. P. Chavez and J. P. Zehr (2011). "Differential distributions of Synechococcus subgroups across the California current system." Frontiers in Microbiology (2): 1-22.

Paerl, R. W., K. A. Turk, R. A. Beinart, F. P. Chavez and J. P. Zehr (2012). "Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR." Environmental Microbiology 14(3): 580-593.

Paytan, A., B. J. Cade-Menun, K. McLaughlin and K. L. Faul (2003). "Selective phosphorus regeneration of sinking marine particles: evidence from P-31-NMR." Marine Chemistry 82(1-2): 55-70.

Paytan, M., M. Kastner and F. P. Chavez (1996). "Glacial to interglacial fluctuations in productivity in the equatorial Pacific as indicated by marine barite." Science 274: 1355-1357.

Pearse, J. S., W. T. Doyle, V. B. Pearce, M. M. Gowing, J. T. Pennington, E. Danner and A. Wasser (2015). Long-term Monitoring of Surfgrass Meadows in the Monterey Bay National Marine Sanctuary: Recovery followed by Stability after the Termination of a Domestic Sewage Discharge. Marine Sanctuaries Conservation Series, ONMS. 15-10.

Pennington, J. T., Castro, C.G., Collins, C.A., Evans, W.W. IV, Friederich, G.E., Michisaki, R.P., Chavez, F.P. (2009). The Northern and Central California Coastal Upwelling System. Carbon and Nutrient Fluxes in Continental Margins. K.-K. Liu. Berlin Heidelberg, Springer-Verlag 25: 29-44.

Pennington, J. T., M. Blum and F. P. Chavez (2015). "Seawater sampling by an autonomous underwater vehicle: “Gulper” sample validation for nitrate, chlorophyll, phytoplankton, and primary production." Limnology and Oceanography: Methods.

Pennington, J. T., C. A. Castro, C. A. Collins, W. W. I. Evans, G. E. Friederich, R. P. Michisaki and F. P. Chavez (2010). A carbon budget for the northern and central California coastal upwelling system. Continental Margins Task Team The Synthesis Book.

Pennington, J. T. and F. P. Chavez (1993). Pelagic barnacles: distribution of larvae and recruitment to coastal moorings. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 324.

Pennington, J. T. and F. P. Chavez (2000). "Seasonal fluctuations of temperature, salinity, nitrate, chlorophyll and primary production at station H3/M1 over 1989-1996 in Monterey Bay, California." Deep-Sea Research II 47(5-6): 947-973.

Pennington, J. T., K. L. Mahoney, V. S. Kuwahara, D. D. Kolber, R. Calienes and F. P. Chavez (2006). "Primary production in the eastern tropical Pacific: A review." Progress in Oceanography 69(2-4): 285-317.

Pennington, J. T., R. P. Michisaki and F. P. Chavez (1998). The 1997-98 El Niño, Chlorophyll and Primary Production: Spatial and Seasonal Effects in Central California. 1998 Ocean Sciences Meeting, AGU Abstract.

Pennington, J. T., R. P. Michisaki, R. Marin and F. P. Chavez (2002). Across the NE Pacific in Spring, 2001: Physical, Chemical and Biological Measures on a Mid-latitude Section. 2002 Ocean Sciences Meeting, AGU Abstract.

Pennington, J. T., S. A. Stricker and C. M. Young (2002). "Phylum Brachiopoda." Atlas of marine invertebrate larvae.: 441-461.

Pennington, J. T., M. N. Tamburri and J. P. Barry (1999). "Development, temperature tolerance, and settlement preference of embryos and larvae of the articulate brachiopod Laqueus californianus." Biological Bulletin 196(3): 245-256.

Peterson, B., R. Emmett, R. Goericke, E. Venrick, A. Mantyla, S. J. Bograd, F. B. Schwing, S. Ralston, K. A. Forney, R. Hewitt, N. Lo, W. Watson, J. Barlow, M. Lowry, B. E. Lavaniegos, F. Chavez, W. J. Sydeman, D. Hyrenbach, R. W. Bradley, P. Warzybok, K. Hunter, S. Benson, M. Weise and J. Harvey (2006). "The state of the California current, 2005-2006: Warm in the North, cool in the South." California Cooperative Oceanic Fisheries Investigations Reports 47: 30-74.

Petruncio, E. T. (1993). Characterization of tidal currents in Monterey Bay from remote and in situ measurements. Oceanography. Monterey, CA, Naval Postgraduate School: 113.

Petruncio, E. T. (1996). Observations and modeling of the internal tide in a submarine canyon. Oceanographic. Monterey, CA, Naval Postgraduate School: 181.

Petruncio, E. T., J. D. Paduan and L. K. Rosenfeld (1994). Characterization of tidal currents in Monterey Bay from in-situ measurements. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting: 180.

Petruncio, E. T., L. K. Rosenfeld and J. D. Paduan (1998). "Observations of the internal tide in Monterey Canyon." Journal of Physical Oceanography 28(10): 1873-1903.

Pfeil, B., A. Olsen, D. C. E. Bakker, S. Hankin, H. Koyuk, A. Kozyr, J. Malczyk, A. Manke, N. Metzl, C. L. Sabine, J. Akl, S. R. Alin, R. G. J. Bellerby, A. Borges, J. Boutin, P. J. Brown, W. J. Cai, F. P. Chavez, A. Chen, C. Cosca, A. J. Fassbender, R. A. Feely, M. González-Dávila, C. Goyet, N. Hardman-Mountford, C. Heinze, M. Hood, M. Hoppema, C. W. Hunt, D. Hydes, M. Ishii, T. Johannessen, S. D. Jones, R. M. Key, A. Körtzinger, P. Landschützer, S. K. Lauvset, N. Lefèvre, A. Lenton, A. Lourantou, L. Merlivat, T. Midorikawa, L. Mintrop, C. Miyazaki, A. Murata, A. Nakadate, Y. Nakano, S. Nakaoka, Y. Nojiri, A. M. Omar, X. A. Padin, G. H. Park, K. Paterson, F. F. Perez, D. Pierrot, A. Poisson, A. F. Ríos, J. M. Santana-Casiano, J. Salisbury, V. V. S. S. Sarma, R. Schlitzer, B. Schneider, U. Schuster, R. Sieger, I. Skjelvan, T. Steinhoff, T. Suzuki, T. Takahashi, K. Tedesco, M. Telszewski, H. Thomas, B. Tilbrook, J. Tjiputra, D. Vandemark, T. Veness, R. Wanninkhof, A. J. Watson, R. Weiss, C. S. Wong and H. Yoshikawa-Inoue (2012). "A uniform, quality controlled Surface Ocean CO2 Atlas (SOCAT)." Earth System Science Data Discussions, Copernicus Publications 5(2): 735-780.

Pilskaln, C. H., F. P. Chavez, K. M. Murphy, P. J. Whaling, R. Y. Anderson, R. D. Pillsbury and R. Still (1991). Seasonal particulate flux in Monterey Bay, California: Coupling of primary production and organic carbon export in a coastal upwelling zone. Oceanography Society, Second Scientific Meeting, Program of Abstracts: 36.

Pilskaln, C. H., R. F. Chavez, R. D. Pillsbury and R. Still (1991). Timeseries measurements of primary production, deep-water carbon fluxes and current flow in Monterey Bay, California. Eastern Pacific Ocean Conference 1991, Program of Abstracts: 8.

Pilskaln, C. H., J. B. Paduan, F. P. Chavez, R. Y. Anderson and W. M. Berelson (1996). "Carbon export and regeneration in the coastal upwelling system of Monterey Bay, central California." Journal of Marine Research 54: 1149-1178.

Pilskaln, C. H., J. B. Paduan, F. P. Chavez, J. T. Pennington and R. Y. Anderson (1993). Carbon cycling in the coastal upwelling region of the Monterey Bay, central California. Oceanography Society, Third Scientific Meeting, Program of Abstracts. Seattle, WA: 206.

Polito, P. S., J. P. Ryan, W. T. Liu and F. P. Chavez (2001). "Oceanic and atmospheric anomalies of tropical instability waves." Geophysical Research Letters 28(11): 2,233-2,336.

Post, W. M., F. P. Chavez, P. J. Mulholland, J. Pastor, T.-H. Peng, K. Prentice and T. Webb III (1992). Climatic feedbacks in the global carbon cycle. The science of global change: the impact of humans on the environment. D. A. Dunnette and R. J. O'Brien. Washington, D.C., American Chemical Society: 392-412.

Quinones, R. A., M. H. Gutierrez, G. Daneri, D. Gutierrez A.,H. E. Gonzalez, F.P. Chavez (2009). The Humboldt Current System. Carbon and Nutrient Fluxes in Continental Margins. K.-K. Liu. Berlin Heidelberg, Springer-Verlag. 25: 44-64.

Radenac, M.-H., F. Léger, M. Messié, P. Dutrieux, C. Menkes and G. Eldin (2016). "Wind-driven changes of surface current, temperature, and chlorophyll observed by satellites north of New Guinea." Journal Geophysical Research: Oceans(121): 2231-2252.

Radenac, M.-H., M. Messié, F. Leger and C. Bosc (2013). "A very oligotrophic zone observed from space in the equatorial Pacific warm pool." Remote Sensing of Environment 134: 224-233.

Rago, T., R. P. Michisaki, B. Marinovic, M. Blum and K. Whitaker (2007). Physical, Nutrient, and Biological Measurements of Coastal Water off Central California in June/July 2006. Monterey, California, Naval Postgraduate School.

Rago, T., R. P. Michisaki, B. Marinovic, M. Blum and K. Whitaker (2007). Physical, Nutrient, and Biological Measurements of Coastal Water off Central California in October 2006. Monterey, California, Naval Postgraduate School.

Rago, T., R. P. Michisaki, B. Marinovic and K. Whitaker (2006). Physical, Nutrient and Biological Measurements of Coastal Waters off Central California in October 2005. Monterey, California, Naval Postgraduate School.

Ramp, S. R., R. E. Davis, N. E. Leonard, I. Shulman, Y. Chao, A. R. Robinson, J. Marsden, P. F. J. Lermusiaux, D. M. Fratantoni, J. D. Paduan, F. P. Chavez, F. L. Bahr, S. Liang, W. Leslie and Z. Li (2009). "Preparing to predict: The Second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay." Deep-Sea Research Part II: Topical Studies in Oceanography 56(3-5): 68-86.

Ramp, S. R., J. D. Paduan, I. Shulman, J. Kindle, F. L. Bahr and F. Chavez (2005). "Observations of upwelling and relaxation events in the northern Monterey Bay during August 2000." Journal of Geophysical Research-Oceans 110(C7).

Ramp, S. R., L. K. Rosenfeld, T. D. Tisch and M. R. Hicks (1997). "Moored observations of the current and temperature structure over the continental slope off central California. Part I: A basic description of the variability." Journal of Geophysical Research 102: 22877-22902.

Raskoff, K. A. (2001). The ecology of the mesopelagic hydromedusae in Monterey Bay, California. Ph.D. Dissertation. Los Angeles, CA, University of California at Los Angeles.

Rau, G. H., F. P. Chavez and G. E. Friederich (2001). "Plankton C-13/C-12 variations in Monterey Bay, California: evidence of non-diffusive inorganic carbon uptake by phytoplankton in an upwelling environment." Deep-Sea Research Part I-Oceanographic Research Papers 48(1): 79-94.

Rau, G. H., C. Low, J. T. Pennington, K. R. Buck and F. P. Chavez (1998). "Suspended particulate nitrogen delta N-15 versus nitrate utilization: observations in Monterey Bay, CA." Deep-Sea Research Part Ii-Topical Studies in Oceanography 45(8-9): 1603-1616.

Rau, G. H., S. Ralston, J. R. Southon and F. P. Chavez (2001). "Upwelling and the condition and diet of juvenile rockfish: A study using C-14, C-13, and N-15 natural abundances." Limnology and Oceanography 46(6): 1565-1570.

Rienecker, E. (2008). Intermediate Nepheloid Layers in the Central California Coastal Zone. Eastern boundary upwelling ecosystems. Presentation. June 2008, Las Palmas, Spain.

Rienecker, E., J. Ryan, M. Blum, C. Dietz, L. Coletti, R. Marin III, W. P. Bissett (2008). "Mapping phytoplankton in-situ using a laser scattering sensor." Limnology and Oceanography, Methods 6: 153-161.

Robison, B. H. (1993). "New technologies for sanctuary research." Oceanus 36(3): 75-80.

Robison, B. H., K. R. Reisenbichler, R. E. Sherlock, J. M. B. Silguero and F. P. Chavez (1998). "Seasonal abundance of the siphonophore, Nanomia bijuga , in Monterey Bay." Deep-Sea Research II 45(8-9): 1741-1751.

Rogers, P., F. P. Chavez, H. W. Jannasch, L. J. Ferioli and C. M. Sakamoto (1996). Drifting during IronEXII. EOS Transactions, American Geophysical Union, 1996 Ocean Sciences Meeting.

Rosenfeld, L., K.,, G. Hatcher, T. Anderson, J. Roughgarden and Y. Shkedy (1993). Upwelling fronts and barnacle recruitment off central California. Eastern Pacific Ocean Conference, 1993.

Rosenfeld, L. K. and M. B. A. R. Institute. (1994). Hydrographic data collected in Monterey Bay during 1 September 1988 to 16 December 1992. Monterey, California, Monterey Bay Aquarium Research Institute.

Ryan, J. P., J. F. R. Gower, S. A. King, W. P. Bissett, A. M. Fischer, R. M. Kudela, Z. Kolber, F. Mazzillo, E. V. Rienecker, F. P. Chavez (2008). "A coastal ocean extreme bloom incubator." Geophysical Research Letters 35: L12602.

Ryan, J. P., F. P. Chavez and J. G. Bellingham (2005). "Physical-biological coupling in Monterey Bay, California: topographic influences on phytoplankton ecology." Marine Ecology-Progress Series 287: 23-32.

Ryan, J. P., F. P. Chavez, J. G. Bellingham, E. Rienecker, R. Kudela, A. V. Woude, R. Maffione and A. Fischer (2002). Environmental processes in the Monterey Bay National Marine Sanctuary: Studies integrating AVIRIS and synoptic in-situ sensing, Pasadena, CA.

Ryan, J. P., H. M. Dierssen, R. M. Kudela, C. A. Scholin, K. S. Johnson, J. M. Sullivan, A. M. Fischer, E. V. Rienecker, P. R. McEnaney and F. P. Chavez (2005). "Coastal ocean physics and red tides: an example from Monterey Bay, California." Oceanography 18(2): 246-255.

Ryan, J. P., A. M. Fischer, R. M. Kudela, J. F. R. Gower, S. A. King, R. Marin Iii and F. P. Chavez (2009). "Influences of upwelling and downwelling winds on red tide bloom dynamics in Monterey Bay, California." Continental Shelf Research 29(5-6): 785-795.

Ryan, J. P., M. A. McManus, R. M. Kudela, M. Lara Artigas, J. G. Bellingham, F. P. Chavez, G. Doucette, D. Foley, M. Godin, J. B. J. Harvey, R. Marin III, M. Messié, C. Mikulski, J. T. Pennington, F. Py, K. Rajan, I. Shulman, Z. Wang and Y. Zhang (2013). "Boundary influences on phytoplankton ecology in a stratification-enhanced upwelling shadow." Deep-Sea Research Part II(101): 63-79.

Ryan, J. P., M. A. McManus, R. M. Kudela, M. Lara Artigas, J. G. Bellingham, F. P. Chavez, G. Doucette, D. Foley, M. Godin, J. B. J. Harvey, R. Marin III, M. Messié, C. Mikulski, T. Pennington, F. Py, K. Rajan, I. Shulman, Z. Wang and Y. Zhang (2014). "Boundary influences on HAB phytoplankton ecology in a stratification-enhanced upwelling shadow." Deep Sea Research Part II: Topical Studies in Oceanography 101(0): 63-79.

Ryan, J. P., M. A. McManus, J. D. Paduan and F. P. Chavez (2008). "Phytoplankton thin layers caused by shear in frontal zones of a coastal upwelling system." Marine Ecology-Progress Series 354: 21-34.

Ryan, J. P., P. S. Polito, P. G. Strutton and F. P. Chavez (2002). "Unusual large-scale phytoplankton blooms in the equatorial Pacific." Progress in Oceanography 55: 263-285.

Ryan, J. P., I. Ueki, Y. Chao, H. C. Zhang, P. S. Polito and F. P. Chavez (2006). "Western Pacific modulation of large phytoplankton blooms in the central and eastern equatorial Pacific." Journal of Geophysical Research-Biogeosciences 111(G2): 14.

Saba, V. S., J. R. Spotila, F. P. Chavez and J. A. Musick (2008). "Bottom-up and climatic forcing on the worldwide population of leatherback turtles." Ecology 89(5): 1414-1427.

Sakamoto, C. M., G. E. Friederich, S. K. Service and F. P. Chavez (1996). "Development of automated surface seawater nitrate mapping systems for use in open ocean and coastal waters." Deep-Sea Research I 43(11-12): 1763-1775.

Sakamoto, C. M., F. J. Millero, W. Yao, G. E. Friederich and F. P. Chavez (1998). "Surface seawater distributions of inorganic carbon and nutrients around the Galapagos Islands: Results from the PlumEx experiment using automated chemical mapping." Deep-Sea Research II 45: 1055-1071.

Santora, J. A., W. J. Sydeman, M. Messié, F. Chai, Y. Chao, S. A. Thompson, B. K. Wells and F. P. Chavez (2013). "Triple check: Observations verify structural realism of an ocean ecosystem model." Geophysical Research Letters 40(7).

Scholin, C. A., P. E. Miller, K. R. Buck, F. P. Chavez, P. Harris, P. Haydock, J. Howard and G. Cangelosi (1997). "Detection and quantification of Pseudo-nitzschia australis in cultured and natural populations using LSU rRNA-targeted probes." Limnology and Oceanography.

Schwarz, J. N., P. Kowalczuk, S. Kaczmarek, G. F. Cota, B. G. Mitchell, M. Kahru, F. P. Chavez, A. Cunningham, D. McKee, P. Gege, T. Kishino, D. A. Phinney and R. Raine (2002). "Two models for absorption by coloured dissolved organic matter (CDOM)." Oceanologia 44(2): 209-241.

Schwing, F. B., T. L. Hayward, K. M. Sakuma, T. Murphree, A. S. Mascarenas, S. I. L. Castillo, A. W. Mantyla, S. L. Cummings, F. P. Chavez, K. Baltz and D. G. Ainley (1997). "The state of the California Current, 1996-1997: Mixed signals from the tropics." California Cooperative Oceanic Fisheries Investigations Reports 38: 22-47.

Service, S. K., J. A. Rice and F. P. Chavez (1998). "Relationship between physical and biological variables during the upwelling period in Monterey Bay, CA." Deep-Sea Research II 45: 1669-1685.

Sevadjian, J. C., M. A. McManus, J. Ryan, A. T. Greer, R. K. Cowen and C. B. Woodson (2014). "Across-shore variability in plankton layering and abundance associated with physical forcing in Monterey Bay, California." Continental Shelf Research 72(0): 138-151.

Sevadjian, J. C., E. E. McPhee-Shaw, B. Y. Raanan, O. M. Cheriton and C. D. Storlazzi (2015). "Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California." Journal of Geophysical Research: Oceans 120(5): 3462-3483.

Shadden, S. C., F. Lekien, J. D. Paduan, F. P. Chavez and J. E. Marsden (2009). "The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay." Deep-Sea Research Part II: Topical Studies in Oceanography 56(3-5): 161-172.

Shulman, I., C. Rowley, S. Anderson, S. DeRada, J. Kindle, P. Martin, J. Doyle, J. Cummings, S. Ramp, F. Chavez, D. Fratantoni, R. Davis (2009). " Impact of glider data assimilation on the Monterey Bay model." Deep-Sea Research II.

Shulman, I., J. Kindle, P. Martin, S. Derada, J. Doyle, B. Penta, S. Anderson, F. Chavez, J. Paduan and S. Ramp (2007). "Modeling of upwelling/relaxation events with the Navy Coastal Ocean Model." Journal of Geophysical Research-Oceans 112(C6).

Sifeddine, A., D. Gutierrez, L. Ortlieb, H. Boucher, F. Velazco, D.B. Field, G. Vargas, M. Boussafir, R. Salvatteci, V. Ferreira, M. García, J. Valdes, S. Caquineau, M. Mandeng Yogo, F. Cetin, J. Solis, P. Soler, T. Baumgartner (2008). "Changes in terrestrial runoff, water mass oxygenation and upwelling productivity recorded in laminated sediments off the Central Peruvian Coast spanning the last centuries." Progress in Oceanography.

Silguero, J. M. B. (2001). The seasonal abundance and vertical distribution of rocketship siphonophores over a seven year period, including the impact of the 1997-1999 ENSO, and their metabolic demand and prey requirements. Santa Barbara, CA, University of California at Santa Barbara.

Silver, M. W., S. L. Coale and F. P. Chavez (1998). "Exploratory observations of marine aggregates > 0.25 mm at sub-euphotic depths (40-400m): Implications for midwater formation." Deep-Sea Research II 45: 1669-1685.

Silver, M. W., S. L. Coale, C. H. Pilskaln and F. P. Chavez (1998). "Exploratory observations of marine aggregates at sub-euphotic depths." Deep-Sea Research Part II-Topical Studies in Oceanography 45(8-9): 1839-1861.

Smith, J. M., K. L. Casciotti, F. P. Chavez and C. A. Francis (2014). "Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters." ISME J 8(8): 1704-1714.

Smith, J. M., F. P. Chavez and C. A. Francis (2014). "Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean." PLOS One 9(9):e108173.

Smith, J. M., J. Damashek, F. P. Chavez and C. A. Francis (2015). "Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean." Limnology and Oceanography.

Smith, J. M., A. C. Mosier and C. A. Francis (2014). "Spatiotemporal Relationships Between the Abundance, Distribution, and Potential Activities of Ammonia-Oxidizing and Denitrifying Microorganisms in Intertidal Sediments." Microbial Ecology 69(1): 13-24.

Smith Jr., K. L., M. Messié, A. D. Sherman, C. L. Huffard, B. W. Hobson, H. A. Ruhl and A. Boetius (2015). "Navigating the uncertain future of global oceanic time series." EOS(96).

Smith, M. A. (1997). Comparison of trajectories generated by the NOAA oil spill model to trajectories produced using HF radar-derived surface currents in Monterey Bay. Monterey, CA,, Naval Postgraduate School.

Strutton, P. G. and F. P. Chavez (2003). Scales of Biological-Physical Coupling in the Equatorial Pacific. Handbook of Scaling Methods in Aquatic Ecology: Measurement, Analysis and Simulation., CRC Press, LLC.

Strutton, P. G. and F. P. Chavez (2004). "Biological heating in the equatorial Pacific: Observed variability and potential for real-time calculation." Journal of Climate 17(5): 1097-1109.

Strutton, P. G., F. P. Chavez, R. C. Dugdale and V. Hogue (2004). "Primary productivity in the central equatorial Pacific (3 degrees S 130 degrees W) during GasEx-2001." Journal of Geophysical Research-Oceans 109(C8): 13.

Strutton, P. G., W. Evans and F. P. Chavez (2008). "Equatorial Pacific chemical and biological variability, 1997-2003." Global Biogeochemical Cycles 22(2).

Strutton, P. G., J. P. Ryan and F. P. Chavez (2001). "Enhanced chlorophyll associated with tropical instability waves in the equatorial Pacific." Geophysical Research Letters 28(10): 2005-2008.

Sudek, S., R. C. Everroad, A. M. Gehman, J. M. Smith, C. L. Poirier, F. P. Chavez and A. Z. Worden (2015). "Cyanobacterial distributions along a physico-chemical gradient in the northeastern Pacific Ocean." Environmental Microbiology.

Sutton, A. J., R. A. Feely, C. L. Sabine, M. J. McPhaden, T. Takahashi, F. P. Chavez, G. E. Friederich and J. T. Mathis (2014). "Natural variability and anthropogenic change in equatorial Pacific surface ocean pCO2 and pH." Global Biogeochemical Cycles 28(2): 2013GB004679.

Suzuki, M. T., O. Beja, L. T. Taylor and E. F. DeLong (2001). "Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton." Environmental Microbiology 3(5): 323-331.

Suzuki, M. T., C. M. Preston, F. P. Chavez and E. F. DeLong (2001). "Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay." Aquatic Microbial Ecology 24(2): 117-127.

Suzuki, M. T., L. T. Taylor and E. F. DeLong (2000). "Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5 '-nuclease assays." Applied and Environmental Microbiology 66(11): 4605-4614.

Takahashi, T. S. C. S., R. Wanninkhof, C. Sweeney, R. A. Feely, D. W. Chipman, B. Hales, G. Friederich, F. P. Chavez, C. Sabine, A. Watson, D. C. E. Bakker, U. Schuster, N. Metzl, H. Yoshikawa-Inoue, Masao Ishii, T. Midorikawa, Y. Nojiri, A. Körtzinger, T. Steinhoff, M. Hoppema, J. Olafsson, T. S. Arnarson, B. Tilbrook, T. Johannessen, A. Olsen, R. Bellerby, C. S. Wong, Bruno Delille, N. R. Bates, H. J. W. de Baar (2008). "Climatological Mean and Decadal Change in Surface Ocean pCO2, and Net Sea-air CO2 Flux over the Global Oceans." Deep-Sea Research II.

Thomsen, P. F., J. Kielgast, L. L. n. Iversen, P. R. Møller, M. Rasmussen and E. Willerslev "Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples." Plos One 7(8): e41732.

Timmerman, A. H. V., M. A. McManus, O. M. Cheriton, R. K. Cowen, A. T. Greer, R. M. Kudela, K. Ruttenberg and J. Sevadjian (2014). "Hidden thin layers of toxic diatoms in a coastal bay." Deep Sea Research Part II: Topical Studies in Oceanography 101(0): 129-140.

Tugrul, S., J. W. Murray, G. E. Friederich and I. Salihoglu (2013). "Spatial and temporal variability in the chemical properties of the oxic and suboxic layers of the Black Sea." Journal of Marine Systems(0).

van den Bosch, J., C. M. Davis and W. Rhea (1993). Atomospheric correction of AVIRIS data of Monterey Bay contaminated by thin cirrus clouds, NASA Technical Report.

Vesecky, J. F., C. C. Teague, R. G. Onstott, J. M. Daida, P. Hansen, D. Fernandez, N. Schnepf and K. Fischer (1997). Surface current response to land-sea breeze circulation in Monterey Bay, California as observed by a new multifrequency HF radar. IEEE Oceans 97.

Wankel, S. D., S. B. Joye, V. A. Samarkin, S. R. Shah, G. Friederich, J. Melas-Kyriazi and P. R. Girguis (2010). "New constraints on methane fluxes and rates of anaerobic methane oxidation in a Gulf of Mexico brine pool via in situ mass spectrometry." Deep-Sea Research Part II: Topical Studies in Oceanography 57(21-23): 2022-2029.

Wankel, S. D., C. Kendall, J. T. Pennington, F. P. Chavez and A. Paytan (2007). "Nitrification in the euphotic zone as evidenced by nitrate dual isotopic composition: Observations from Monterey Bay, California." Global Biogeochemical Cycles 21(2): 13.

Xu, Y., F. Chai, A. Rose, M. Ñiquen and F. P. Chavez (2013). "Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: a three-dimensional modeling study. Ecological Modelling, ." Global Climate Change and Marine Ecosystems 264: 64-82.

Xu, Y., K. A. Rose, F. Chai, F. P. Chavez and P. Ayon (2015). "Does spatial variation in environmental conditions affect recruitment? A study using a 3-D model of Peruvian anchovy." Progress in Oceanography.